Scaffold Ga0307377_10068879

Overview

Basic Information

• Taxon OID: 3300031673
• Scaffold ID: Ga0307377_10068879
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2935
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003784	Metagenome	468	Y
F013279	Metagenome / Metatranscriptome	272	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F055450	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307377_100688791	F026864	N/A	HKMSEQDKMIEYVFTVVIATANKSFDVQLWDFAGDEPKHLAGGEGSNWRTALGQALSKIELPIDKVDKTVNDLVKEGVEDEGV
Ga0307377_100688793	F023834	GGAGG	MSEPTVDYWRAKADLCRDLAIMQMNDEEMEKEAGMNLMRMVHALSMVDAFNEGGDND
Ga0307377_100688795	F055450	GGAGG	MDKDKRLRGAASQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWIDIDGNTIPVVGVRIRTADGRGTPSLKEDIHRGTNQGNDGGEA
Ga0307377_100688797	F013279	AGGAG	MMYDYRCPDCKAELTIERSIHEQPREPSCFECHIPMIRKWDSPSVTFKGKGFYSTDK
Ga0307377_100688799	F003784	GGAGG	MYDDDRERVGHNVTDFAAYGLSHLAPGQDESDDTNTPTTNPLVDHAAVTGYRAIGVSTEDLTSFIESFASLRAMRVKNVGHDQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCD