Scaffold Ga0307377_10027573

Overview

Basic Information

• Taxon OID: 3300031673
• Scaffold ID: Ga0307377_10027573
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5098
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017934	Metagenome / Metatranscriptome	238	Y
F074173	Metagenome	120	Y
F082600	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307377_100275732	F082600	GGAG	MTKLRFARYAAIAMLMLLAACSHRVPQGTVEVIDTSLSITPRAEKAALDAVQEQIAHMQRGDQLVIIPITGDAANDAGGRVLRLSAPTQRETYDTDLHRFQEQAGKQFATWAASLDKHQSRTDIFGALDAARQEFALLPNGMNRNLVVVTDFLEDDGTYRFVSASSLTNPARARELAARLREQHGFMLQGVPLCLGRLESSDFAPLTAQRKEAVQSFWTAYFAAGGEPAEIQFDGTGILADVGRGCFSGNR
Ga0307377_100275735	F017934	GGAGG	MTKPNTEPQPRDLDDAIRERVLERARAINTKLLARLETVAEDLNLGGHRAALGGLDGLERQIETMRSFLLLLS
Ga0307377_100275737	F074173	AGGAG	MTTDGHAEERRVSGFENGAKPTEILKFSHDSVGQSYPQHYPQVRETLGEPMTIREVARFIGCSPWTVRHRYLPQGIPHLRSGPMGKLIFFRNQVVQWILQQQKKGGG