Scaffold Ga0307377_10000910

Overview

Basic Information

• Taxon OID: 3300031673
• Scaffold ID: Ga0307377_10000910
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39280
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071899	Metagenome	121	N
F089728	Metagenome	108	N
F100248	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307377_1000091028	F100248	GGA	MTKLSILAILSLTFIGVTRLAQFVLSLFVIVFFGFTTFELIRTFKQPAKRQYAA
Ga0307377_1000091031	F089728	GGAGG	MKPIVMLWAAAIAIVGSCLFWRNRRRYRRKAFLWVAMKSAVELLILFLVAALMPALLIVWLVVWVTRPIKTPWVRTVVGVLSGVVFGIFSSFALEALIFFGIFAIDLKTGAHGGGFLHCWKRAREEDADRHSTMLVPEAKAA
Ga0307377_100009106	F071899	GAGG	MQARVKLTPRIIARLIVGKPVTVNLPAGTSSLSLVTEGKFHEFPRAFHAPEEFEPETSHTEVIGLFDLIFGKH