Scaffold Ga0307374_10003765

Overview

Basic Information

• Taxon OID: 3300031670
• Scaffold ID: Ga0307374_10003765
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - OX-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25713
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042473	Metagenome	158	Y
F063947	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307374_1000376527	F063947	N/A	MDDLGAVTDDHVILAWLQAEIESLDFQQYIVGDPPNPAYLSMALKAARSPNLKDAEQNELRRRIISKTHGFGVGAGSFQGLANDIKWRRF
Ga0307374_100037656	F042473	GAG	MPDRMSTSITAESLDVDEVGHVLVQLSDVPSGQWMEAFREYWGDAGTIGRTVVKKDAFSHFSERTIVFRGVDVDGFIEFCKPATEGAIRFANDRTQRFETEREARIRGRSESAGMEQRHVDAERAKARKVKFD