Scaffold Ga0307374_10002146

Overview

Basic Information

• Taxon OID: 3300031670
• Scaffold ID: Ga0307374_10002146
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - OX-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35560
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001450	Metagenome / Metatranscriptome	692	Y
F002623	Metagenome / Metatranscriptome	542	Y
F035719	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307374_1000214616	F002623	AGGCGG	LLVREYKESDLDALRRMHASQGFDYPIPDIDDPIFVSKLVLEDDSGCAAMASLARLTCEMYLLVDRDAERAKQNSGGKLSHSTCSRAQARQRYDWLLALHAAGERDLFARGLDDAHAWLPPPIARRFGRRLEALGWIRDDAWRPYCRRLNSDL
Ga0307374_1000214626	F035719	AGG	MEIAIRVSDVLAAEARERGVSVEVYVQELLARSAGRATSEPEIESVRAAIDRLTELRKGNKLGGLRLKDLVHQGHKY
Ga0307374_1000214630	F001450	N/A	MIRVTRETHRTPASIQQRVELAGGVNCFGEANFRVVWGGARLAWIGGRWTDRDASGNVIREAIELRREPKYVPHDRWHIERWMPPEAYGSPELWRAQTTEVEGGIAIPALGPYPSRGEYEHCFTLSGVRGEFIPLSPAACDWIVRAVEWARRQPRGVRRAAVGARESRRTLDFDHAADDIFDDSAPAFHAQPFVPLANR