Scaffold Ga0307375_10474865

Overview

Basic Information

• Taxon OID: 3300031669
• Scaffold ID: Ga0307375_10474865
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 759
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010391	Metagenome / Metatranscriptome	304	Y
F020142	Metagenome / Metatranscriptome	225	Y
F033777	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307375_104748652	F020142	N/A	MRKGPKRIEIPGKKWNEKFIHEKKTWHVVHKLDNVVYAVCEMRPGVVGGLVERFYI
Ga0307375_104748653	F010391	N/A	MTEEIFQQLGFERVDVPIEESGHDKDFYYYTLDIGDICLISNADDEAIEKGWSCAIFDSITFNIKGSGDLEDLVRIIRNNTNA
Ga0307375_104748654	F033777	N/A	MKIERYEQVGELFLTPTIKYVFDKSLFGFYCVDFIWLRWGFSVSWEHKKKRK