Scaffold Ga0307375_10416120

Overview

Basic Information

• Taxon OID: 3300031669
• Scaffold ID: Ga0307375_10416120
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 830
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F002933	Metagenome / Metatranscriptome	519	Y
F093485	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307375_104161201	F000332	N/A	LVGAVAKNGCHVREFYGIAYTVHDPTERHKQMMAWLDKNAQYCKSTDYKVIWNNLAEWSGTADSTWLRAKVVHGYQDALEREKK
Ga0307375_104161202	F002933	GAG	MIPPIHKWYPMVQPGGDPTKTDALERRAERLSEEYAQALKMKKVKDKIDDLEFELYVKKAERNQLSLEIFTNRKIDILV
Ga0307375_104161203	F093485	N/A	MVTAKKAPAKAPAKVAPVKCRTPKPKAEQTINVSVAAPTPVKAEAKKDDSTVGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRTVILNAITSSSHQPQLKEIKVLEH