Scaffold Ga0307375_10358025

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307375_10358025

Scaffold Ga0307375_10358025

Overview

Basic Information
Taxon OID	3300031669 Open in IMG/M
Scaffold ID	Ga0307375_10358025 Open in IMG/M
Source Dataset Name	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	918
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location Name	Finland: Risofladan, Vaasa
Coordinates	Lat. (^o)	63.0472	Long. (^o)	21.7116	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004580	Metagenome / Metatranscriptome	432	Y
F095327	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307375_103580254	F004580	GGGGG	MISRLIGGFVAILVGASLITPVSNEVAFAARAGGPLANATSWGTTVLNLVPGFFALGILGIGVAVTYGSLRDAGVV
Ga0307375_103580255	F095327	N/A	MIGRLIGGFITILIGVSLIDPISTEVNLATASTTN

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