NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307375_10218793

Scaffold Ga0307375_10218793


Overview

Basic Information
Taxon OID3300031669 Open in IMG/M
Scaffold IDGa0307375_10218793 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1266
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033811Metagenome / Metatranscriptome176N
F061389Metagenome / Metatranscriptome132Y
F066285Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0307375_102187932F066285N/AMNKKSWNIVFWNRPDVHKNCVWSDGNRYFDGFLGDDNSVYRNTSGVPVKEPDAIYWVERPKTLSDDDE
Ga0307375_102187933F061389N/AMSPGTIFNLKAHEEHEDLNIFMCEDLDGEGNEFWLSEGFVLGEFEDGYKPLCWTQDLFII
Ga0307375_102187934F033811N/AMDTNITQAFFEAIDYPHVKHIIRTNKSIKSYWGGKTPSIADLKRVITNMWKRVSEHDAAEDCVNGIVMIKNGKNVRIDFLYISYSLKMSEQSSSDNQEDVQQVIEPEKESSLTHP
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