Scaffold Ga0307375_10149446

Overview

Basic Information

• Taxon OID: 3300031669
• Scaffold ID: Ga0307375_10149446
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1619
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014593	Metagenome / Metatranscriptome	261	Y
F026002	Metagenome	199	N
F036229	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307375_101494462	F026002	N/A	MEQKFKLEFPLDLEIKYEDPEELLELAAKEEFVTFMFGNAIAAIKQAIRKNKSECVIFSIQNYNVRIAIKKEHYKTFLNKAIKHYEALEEYSKCSELVNLKSRL
Ga0307375_101494463	F036229	N/A	MTIYCYYYIKNDPNQEKLGKILTGSRLEAAKEFAGQKQLPLKTFLSIWGVAKKTVF
Ga0307375_101494464	F014593	N/A	MDPKKDFKKFFQKMFDTPVDIQGEILTPEELTKKNFVIFVDNYKKAVIRSQEVQEKFGLDLWSWEDLFAKSLEGLIYYTFDDEVAEVILWYIYEHSLAEDQEDKIVNFGDEAFVIETAEDLYNLVCLVEE