Scaffold Ga0307375_10001808

Overview

Basic Information

• Taxon OID: 3300031669
• Scaffold ID: Ga0307375_10001808
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22710
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003287	Metagenome	495	Y
F004581	Metagenome	432	Y
F014350	Metagenome / Metatranscriptome	263	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307375_1000180810	F003287	AGGAGG	MEKQRRNPQTLSVEQFEALRTRLDERGNVPPPQPESYMMGEIVRGVYPQLKKLRENGYTLKMLVRIFEENGVVITTNALSTYMKNLGLPREQAPVRAASKGTVGSPTVEVRRGQFQMKPDVTL
Ga0307375_1000180818	F014350	N/A	MATQVNPLEAPAPSAKPGRRGSKAKEQQTEHAAQAETDFPPIGQEADPQQELDTLENQADAPVRGSYLREKDGYNALSPEQKAVCDKDFESYLDRLTRPIEVKEGETRQDAIQRAKEEYCAARQEHTANHREMAKTMLASKINCLNSEYPRNSFSLRSPDVAKEFLATAFYHNASAAKGLTSFDKDVFAASKKAALREFSALAASVENSGSATKDFNNTFALCIERPPIGAQNQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRATRTKTTQELDR
Ga0307375_1000180819	F004581	AGGAGG	MQQAEIYNGHAGRFYRMAEHIELSMTPQHHQKHGGPDPITTNDITLATTLMNSVYGYPAGKQAVLALSAGMIPGEERSQTVRGLFMMTAGCSEYDQTVTYTILPLPGREIETANLLKATAAYSLERAEAHSRTIPLLTRQPAQLER