Scaffold Ga0307375

Basic Information
Taxon OID	3300031669 Open in IMG/M
Scaffold ID	Ga0307375_10001206 Open in IMG/M
Source Dataset Name	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031669 Open in IMG/M

Scaffold ID

Ga0307375_10001206 Open in IMG/M

Source Dataset Name

Soil microbial communities from Risofladan, Vaasa, Finland - TR-1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28825
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (92.31%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

28825

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (92.31%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location Name	Finland: Risofladan, Vaasa
Coordinates	Lat. (^o)	63.0472	Long. (^o)	21.7116	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Finland: Risofladan, Vaasa

Coordinates

Lat. (^o)

63.0472

Long. (^o)

21.7116

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F004301	Metagenome / Metatranscriptome	444	Y
F004832	Metagenome / Metatranscriptome	421	Y
F007789	Metagenome / Metatranscriptome	344	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307375_1000120610	F003764	GGAG	VNRVMQIQDDSPYVLDENPAALLAGAEIEAANFSRCLKIIRFWSQSSTLPRSRHDEMVEEEQRLASLYAAILFEIGSAFGIEQADELKVRIEAACILDDWECPPAEQGLLFPIAADSPTAASPARARK
Ga0307375_1000120611	F004301	GGAG	MAAMQFSLFNTQPQVATVGIEPSVNARNAKRQLDTLRNQLATAQADLEDVNYNLSIVTMHQRASREGKIDANWWDAAMRFGMLDTGEEPVYRLGSYPVKVLRWIRHLLFTLNAERRDILSAIAKLEPKVTALSQIIGSAIQ
Ga0307375_1000120623	F004832	AGGAG	MQIVYRNIRFSAKVDRCLRRRWRMHGDLSIRVREALDGVNLLEVELLEVDYRRVHAMQVGVFESVWIAVHEVARLRGCSANTLVNSAVWVAFGAHRSSLRGRPRGPNQREVPVPKACLGG
Ga0307375_1000120626	F007789	N/A	LLAFYNGPWLNIPFQAIDTAFVFPLTHEIADELERIGGEVLGGVNRSKAFRVMVAYFASIYKLKNKTQTTSA
Ga0307375_100012067	F003389	AGG	MQITVWSVAADDDNGTYASVHETELAAYRRLIQLTVDSDDKEQVAKAEAFIEAGDLDGLDEWIHAEVIEPLNTYSVDQHKLDVPAASVTAPAEENQHITRRELASVLHGLRLMQEQWEPQMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLSPTEIDDLCERLNMGFCN
Ga0307375_100012068	F003942	GGAG	MLGRRLNPTIHRYEDVELIEVHSEYLECSFLVAKDEWESGKTLLTIFSPLDSNVLGFSHYRLHRDNISAAGPKLPDGTTAQPGMAETIELQRQAGHAIYADHLSAMLYGTGLNPARS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307375_10001206

Overview

Ecosystem & Geography

Associated Families

Sequences