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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031669 Open in IMG/M |
| Scaffold ID | Ga0307375_10000445 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - TR-1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 52094 |
| Total Scaffold Genes | 53 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (16.98%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Risofladan, Vaasa | |||||||
| Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007838 | Metagenome / Metatranscriptome | 344 | Y |
| F014212 | Metagenome | 265 | Y |
| F021450 | Metagenome | 219 | N |
| F028047 | Metagenome | 193 | Y |
| F043160 | Metagenome / Metatranscriptome | 157 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307375_1000044512 | F007838 | N/A | MKKIFIFFLLFLSVQVFGQVIVVKDPTWKLEDATKDRIEMADRLREYTKLTEQVATERENLQIIKDATEKLKKINRKVANYHNLELAIAQVSDSYSRVLGLLKTLNEHNCFKPSEYHMINESMMGLLSQTSYAISTLTVVLTDNFSEMSDGERLLNMNQAIKELRENLGVINCAIIEVEILDNQRMQLRTLQYVNSIFK |
| Ga0307375_1000044517 | F014212 | N/A | MKTKLILALLLISITSSAQLIHVEGTKAIGINGAYVKNGFNVSSRFTFYKSGNLAYRASLDYERVSFDLSKASIVFANPELMYTFYTLGDEVFFNVKGGILTGAEFINNSILDKKKSQFFVGENIGLCAEYFISNKIMLNLDLDQRFFQLSKVGKASFIIKFGINYNF |
| Ga0307375_1000044525 | F043160 | N/A | MAKKNFDNLTKNSHLGGGLSNLIPEMNEKHEAEETKIASNEVPKTFTMLIEDYEYLQTYSRYMAFHSNSKYPLKRSLSDAINLLREARPEIAID |
| Ga0307375_1000044533 | F028047 | GGA | MEIDMKGVIFRNDWHLLGGKQIDSLFNELFSGVAIQPGIDIVNRLKMLEVCTLEILEDRSSSTVYRIRQTDEVFQIFRPDGKLLNYTTEDYYLQEPIDDLVKEYSMKDPIFKIEKVSDLKDIVHHLKPPKFRALFVDGTFDRVEWIDQPPEDISLVPKLLKKMGAFYTSYVKK |
| Ga0307375_100004459 | F021450 | N/A | MKKTISLLAVLLLFSIEMQAQVTNVLNNFYTVWVKPAIPIIGGLVLIVGALANMGKVLGESRDYKGFITGIVLYVAVYFCLVGIVAFIMAG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |