NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307994_1225989

Scaffold Ga0307994_1225989


Overview

Basic Information
Taxon OID3300031660 Open in IMG/M
Scaffold IDGa0307994_1225989 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #261
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)580
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000754Metagenome / Metatranscriptome906Y
F059349Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0307994_12259891F000754N/AAVDTIGSATADTTMSFNVNNSEFASGASVSAIVAGEPFGWNGNYVMNDMVTTGQIRNRPVITFTNGTAATRVVDVAIFIGG
Ga0307994_12259892F059349AGGTGGMAQEFTINSASIEAKINQLLPSQGGAGAGIDFSASTMIIPIIDLTESAEGSGLREDLQKSMSLNSITSFFVTGATTTIISNTGYFRIFGAWSSNTNTDILFKITDGTTTKD

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