NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307986_10248630

Scaffold Ga0307986_10248630


Overview

Basic Information
Taxon OID3300031659 Open in IMG/M
Scaffold IDGa0307986_10248630 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #82
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)769
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054354Metagenome140Y
F061272Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0307986_102486302F054354GGAGGMNKFIDDGVKKGYEFVVIEPQECYNESIVAFDRGRLVYDTEQLMNCTRKYYEWEYPTAIEWFEYNTMSLTYMKGGPLFFEEDEQFYLTHEDERVTLKVRNKILEDK
Ga0307986_102486303F061272N/AYLKEIKAGSLVVFLDIFQSETIPNVGIVLSIVTFTELVYEELGDGVVWYSVLFGDVDMVVSSEMIILIN

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