Scaffold Ga0307986_10080455

Overview

Basic Information

• Taxon OID: 3300031659
• Scaffold ID: Ga0307986_10080455
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1619
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007139	Metagenome / Metatranscriptome	357	Y
F021865	Metagenome / Metatranscriptome	217	Y
F034347	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307986_100804552	F034347	AGGAGG	MSNPNNNKNFNDEALRINRTLKKENDALSLIIDEVEDYFLNVNTGWEDEVLSTRKIQDMIDKVRSRDAM
Ga0307986_100804553	F021865	AGGAG	MRCKCCDNLLTEWESKARDPKEKSEFLDLCGVCRYHSNPYSYLDDDEILNKLDIKVDSG
Ga0307986_100804554	F007139	AGGA	MITTGIAKYVYLDSTEKYNGEDTGKYTLTVAVDDKEAKTLEKAGVKVRTINTEDGGSYRARKFSTKYPLSFDMIKTDEGEAIGHDFGAESVVQVLWKAGEKHPQHGVATYLTAVKVTNRTEGYKSADAETSEFFA