Scaffold Ga0307986_10080046

Overview

Basic Information

• Taxon OID: 3300031659
• Scaffold ID: Ga0307986_10080046
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1624
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F028524	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307986_100800462	F028524	AGAAG	MTNKPSTHRKAAKMSNANNEFKSTVKEFVTKLSTIENEMTILRQDRTELFTEMKSRLDPRSFRAAVKIHNLQKSTPDQTSLTRILDVLETSE
Ga0307986_100800466	F005620	N/A	NTFKTFCKNNRLRLKEDGDGLPVARAIGKFNSDQFFCNFQNGTIGVYVTRETPRQFTYLHKTLTKLGCVATQLGDFEASYDLEWMNIPPVASLLKIKKGRAKVKDPKWLRA