Scaffold Ga0307986_10061512

Overview

Basic Information

• Taxon OID: 3300031659
• Scaffold ID: Ga0307986_10061512
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1921
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010947	Metagenome	297	Y
F040339	Metagenome	162	Y
F054357	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307986_100615122	F040339	AGGA	MSIDNIDKKTYGELMYRLGQMDAILQDMNSTIARFHEESRSIREAHSPEHVNALNEALQRTAPAPTDAQRQEAEEE
Ga0307986_100615125	F010947	GAGG	MRKDIKKILNPALVEKWNRNKDGSLNGIVFNKGDLVSKKGCDGRSLGIVIEQDGVMAIVQWTEQPDDLSVFDKKTFVSSLKLVSGASK
Ga0307986_100615126	F054357	AGGGGG	MPNMTYKRGDIIMHPMVGKAWLHIAEVKYDDKNGYVYECINQKTGKKILLSAEGYDTITLISETRKR