Scaffold Ga0307986_10027350

Overview

Basic Information

• Taxon OID: 3300031659
• Scaffold ID: Ga0307986_10027350
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3190
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030563	Metagenome	185	Y
F038414	Metagenome	166	Y
F105339	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307986_1002735011	F030563	N/A	YPTSRICSGCKEVFNAVECNIDIGDFWNLPEELAWACSTKCAKDAKDNWLKPKKMQNSANKT
Ga0307986_100273505	F105339	GAG	MIDLTGTHEENMAAIASAPISEGFKAHIRKDYQKQCDELNIELDSIFSKDLDIEHEKNSIPINEIVPKGMTIKKYYSKEQRLLRGESISYMKFD
Ga0307986_100273507	F038414	AGGA	MTREEQRDSTITELYKKRTSPTTLAIQASKIVRSKAQWLWISTSGEDGKGQGTYDVGRRTMKRERLADKKVRAKLAKSSR