Scaffold Ga0307986_10016312

Overview

Basic Information

• Taxon OID: 3300031659
• Scaffold ID: Ga0307986_10016312
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4364
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024418	Metagenome	206	Y
F029562	Metagenome	188	Y
F042574	Metagenome	158	Y
F062181	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307986_100163121	F062181	GAGG	MKVGDLVKLKHPRQPHHGRSGVIVENDQTFSSLPNSPNYFRVIWAASQDDSWLKQQQIEVINESR
Ga0307986_1001631210	F042574	N/A	MKVGDLVKSPFTFFEGQLALVVATDVWDDAVRDKWHIVKLFCSGEERTICEQDMKIVKRCQKNVKSDSNDLQGDSEPVTL
Ga0307986_1001631215	F024418	GAG	MIGKLVRHIELDAIGIVVDHFVYSEFMGGYKVKFLKPVPHTHLPSGFMEDIIGKVTSFEEVIDESR
Ga0307986_100163124	F029562	AGGTGG	MNVGDLVRVRSTAVSIDWKPEQGYLGLIVSPVSLGGDARYIRVKSVKTGAALWVRAYRLTPQNEAEGDK