Scaffold Ga0307986_10005706

Overview

Basic Information

• Taxon OID: 3300031659
• Scaffold ID: Ga0307986_10005706
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8204
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013466	Metagenome	271	Y
F028941	Metagenome	190	N
F104040	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307986_1000570610	F104040	AGGAG	MTIKQTILSNINAINFADIIADILEDRLPSKAPLHTLTDEEVKDLYESLTGTLEEELGQLTDSVVDAFEGPSRAPATTISIERVIDPFESVEVYEGDLSAARELGVRADAVAKPTSPRRFSSGELDPIYK
Ga0307986_1000570611	F028941	GAG	MTNCLDITNLTTAELETLLNDLIAGKKTFKEAVAENPSSISITIEDVKEL
Ga0307986_1000570614	F013466	AGGAGG	MNKYGFKTGDLLKWTDYVKNESVVGLFLGMRPAPNMNLAGDIIVLVGDKRVNWDGWQCDKLEKGEWTCK