NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307984_1081527

Scaffold Ga0307984_1081527


Overview

Basic Information
Taxon OID3300031658 Open in IMG/M
Scaffold IDGa0307984_1081527 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #78
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)961
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013135Metagenome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0307984_10815272F013135AGAAGGMPTLLNEETLSFFEKIQKETTAIEPVNSGLITKPDQEDFNFWNKAGSLTLSAGQGVVNAVEEQGDFIDENIVSLGGLSFGDGDGKTEFKDFIPKYVTPKKWKEGGYSQERNLPVFHKPEGIGENLTEGAARFITGFIGPSKFFKAAG

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