Scaffold Ga0315543_1016002

Overview

Basic Information

• Taxon OID: 3300031651
• Scaffold ID: Ga0315543_1016002
• Source Dataset Name: Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-210
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4185
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.722
  • Long. (^o): -70.847
  • Depth (m): 2.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088228	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315543_10160025	F088228	GGAG	MSVEDFDEEKILSSEDLIVGALRKLLRTYAELSRREEDSRDFLKKLCSFSIETWVWYTLLEAGGAQRFTDILPVVGCSQTSLSDALRELVREGLVRRVEKRYQAVVPAWLLPGYSIFLE