NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10009876

Scaffold Ga0307514_10009876


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10009876 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7997
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F008227Metagenome336Y
F019765Metagenome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_100098761F004778N/AMLDRFELTDGRLLGITTDNASSNYSMTRELQSTLEASGIQWPALRNHIPCMAHVIELALGAFMSSFGVKGRTKSWEAHERDQQFGENESIDIGKSQRLRKEGNARINKVSAMKPGLAKII
Ga0307514_100098767F019765GGAMDNMEASCVFYVKVGTFTHLEQSKIFLLTVKKSGIVTLTVQHDLIVSVIFM
Ga0307514_100098768F008227N/AMDTQPPPPGESGSNTGRLAGATSNTEILGTQQECRHKLVHRDAADAATKHMTQDAHLKIVRKTGSRRNKKQHAVGCEYIHIDAIGVQLTV

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