NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10003294

Scaffold Ga0307514_10003294


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10003294 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15687
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (73.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F006048Metagenome382Y
F010438Metagenome303Y
F060560Metagenome132Y
F092994Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_1000329410F060560N/AVNNCGKYADGFYNSMIDDKNGHIPLPLIMFTCTALRHALLEWQKNKGVHPKACKSKLKAGRPDRSNYFNHKNNGGKIASCCAVMGHKLLTSPGVADKYTFLMNTWNTLPESDQQRVYNNTLATVKRQIQQAENPTPAEVISMEAALVDNAILLDYFVMGGV
Ga0307514_1000329418F092994GGAMDLSACKRMISAEERAKRFTDGRCLYCGGFNHRAAECVARKKAQTFNAAGEEIKEVGTREGSEESGKD
Ga0307514_100032947F004891GGAMIARVSGFGMGVGKFPRPLRGVGVLAMPDAGLDITRCVESVCMVPLGAGVLRLLVHGVAVGVIIDRRCVADGVEVMH
Ga0307514_100032948F010438GGAGMWNRQPFMSASDLEMVSYETRCVAKALAEAPHWQIIETYWNTAMQQNNIWSIAFEARMKEILKEVC
Ga0307514_100032949F006048AGGAGMLNEQPTVDITCSNRYQVHAQVDKVKSHFIQSARDNIAELYDLRHFESTAERFEFIDSLLADNKYLLPVAERVEGGVRRPNPMQRESKADNEWLASTLLSGGTNPAVYLH
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