Scaffold Ga0307514_10002359

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0307514_10002359

Scaffold Ga0307514_10002359

Overview

Basic Information
Taxon OID	3300031649 Open in IMG/M
Scaffold ID	Ga0307514_10002359 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19781
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (55.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6253	Long. (^o)	-120.532	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016905	Metagenome / Metatranscriptome	243	Y
F079413	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000235912	F079413	GGA	MLFYQIYDIDYATNYTKLKLKIRTIQGRLADGACRTVVQSYQLDLHSETELPIQVKELLFDDAYLSKVVEDKKSWFTRMEVLDLIYHQFFFTANSLGRQPTTSQYFQPLAPQTLALVAAAIHCALSEYATGKKATGMFSQDEYRGTFVHSL
Ga0307514_1000235916	F016905	N/A	MPGHHYTPAEHVLQKKVESFGNLLFRLEEHRLTNIYQVVFLFCEYENIGFLVLRYLNTSALPFEEYSEEWLFDEEVSSSSI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.