Basic Information | |
---|---|
Taxon OID | 3300031649 Open in IMG/M |
Scaffold ID | Ga0307514_10001455 Open in IMG/M |
Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 28872 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (31.71%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Washington | |||||||
Coordinates | Lat. (o) | 46.6253 | Long. (o) | -120.532 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008227 | Metagenome | 336 | Y |
F019765 | Metagenome | 227 | Y |
F051592 | Metagenome | 143 | Y |
F060560 | Metagenome | 132 | Y |
F088003 | Metagenome / Metatranscriptome | 109 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0307514_1000145513 | F051592 | GAG | MRLHEVENPLLEVVQHADLHCMEEVGLRDVSYNTGSMTKHVESSVIMAQGEFGIGCLGVGIAEHSI |
Ga0307514_1000145521 | F019765 | GAG | MLQVMDNMEVSCAFYVKVSTFTHLEQSKIAPLTVNKSGIVTITV |
Ga0307514_1000145522 | F008227 | N/A | MDTHPPPPGESRSNTGRLAGATSTTDSLGTQEERRRKLVHCDAANVATIHMTQDAHLNIVRKTGSSKNKKQRAVGCE |
Ga0307514_1000145523 | F088003 | N/A | MEHHDVVSSGIFGDEFPDKRPGEWTKQALITLEEATEAYMVEVTAEFQC |
Ga0307514_100014554 | F060560 | N/A | MFTSTALCHALLEWPKNKGVHPKASKSKLKPDRLDRWNYFNCKHDGGKIVSCCTVTRRKLLTSPGVADMYTFLMNPWNTLPESYQQRMYNTTLATVKRQIQQAETPTPAVAISTEAAPVDNAILLYYLTSEVVSEEPEIGSTDPNIPIDNNCTDDELDFGMPGGSGNFKDEGAESDAIRTASRRERAATERGVV |
⦗Top⦘ |