NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10001455

Scaffold Ga0307514_10001455


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10001455 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28872
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (31.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008227Metagenome336Y
F019765Metagenome227Y
F051592Metagenome143Y
F060560Metagenome132Y
F088003Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_1000145513F051592GAGMRLHEVENPLLEVVQHADLHCMEEVGLRDVSYNTGSMTKHVESSVIMAQGEFGIGCLGVGIAEHSI
Ga0307514_1000145521F019765GAGMLQVMDNMEVSCAFYVKVSTFTHLEQSKIAPLTVNKSGIVTITV
Ga0307514_1000145522F008227N/AMDTHPPPPGESRSNTGRLAGATSTTDSLGTQEERRRKLVHCDAANVATIHMTQDAHLNIVRKTGSSKNKKQRAVGCE
Ga0307514_1000145523F088003N/AMEHHDVVSSGIFGDEFPDKRPGEWTKQALITLEEATEAYMVEVTAEFQC
Ga0307514_100014554F060560N/AMFTSTALCHALLEWPKNKGVHPKASKSKLKPDRLDRWNYFNCKHDGGKIVSCCTVTRRKLLTSPGVADMYTFLMNPWNTLPESYQQRMYNTTLATVKRQIQQAETPTPAVAISTEAAPVDNAILLYYLTSEVVSEEPEIGSTDPNIPIDNNCTDDELDFGMPGGSGNFKDEGAESDAIRTASRRERAATERGVV
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