Scaffold Ga0307514_10001246

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10001246
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33461
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (59.18%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F008531	Metagenome	332	Y
F046750	Metagenome	150	Y
F060560	Metagenome	132	Y
F081959	Metagenome	113	Y
F088003	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000124624	F006048	AGGAG	MLKQRPMLDITRSNWHQVRAQVDNVKSYLTQSAMDNIAELYDLHRSESDAERLEFIDSLLADNKYLFPVAERVEGGVRGPNPMQRESKAANEWPASTLLPGASNPAVNLHQILSLGE
Ga0307514_1000124625	F046750	N/A	VNNRGKYANGYYNSLINDKDGHIPSPLIMFTCTALRHALLEWQKNKGVHPKAAKSQLKADRPDHSNYFNYKNDAGKNASCCAATGPKLLTLSGVADTYTFLMNTCNTLLESYQQRVYTNTLATVKHQIQQAENPMPAVVISVEAARVDNAILLDYLTSEVALEEPEIGSTDPNILIDNHCMDDELHFRMPGGRGDYEDDGDESDECDAIPTSCR
Ga0307514_1000124627	F081959	GAGG	VMSTGISASMATMQMRMRRNKHCKPMIIHRRMWRTEGIVLESVKIGEYISDL
Ga0307514_1000124630	F008531	GGA	MAHVIQLALNTFMSSLGVQGRTKSWEAHERDQQFGENESTDFGKSQRLRKEGNARINKVSAIKPGLAKIIDKVRI
Ga0307514_1000124638	F088003	N/A	MKHHDDISSGIFADELRDKHPREWTKQAFISFQEATEAYMVEVIAESHY
Ga0307514_1000124643	F004891	GGA	MIARASGLWMGVGRFSRPLRGVGVLAMPDAGLDTTRRVDSVCVVPLGAGVLRLLVPGVAVGVIIDRHCVADGVEVTR
Ga0307514_1000124644	F060560	N/A	MFTCTALRHALLEWQKNKGIHSKASKTKLKADRPDRANYFNYKNDGGKNASCCAATGRKLLTSPGIADTYTFLMNTWNTLLGSYQHRVYNNTIATVKRQIQQEENPTPAVVISVEAARVDNAILLDHLASEVALEETEIGSTDPNIPIDNNCTDDELHFAMPWGSRDYEDEGDECDLRDAIPAPSR