Scaffold Ga0307514

Basic Information
Taxon OID	3300031649 Open in IMG/M
Scaffold ID	Ga0307514_10001042 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39903
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (73.47%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

39903

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (73.47%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6253	Long. (^o)	-120.532	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

46.6253

Long. (^o)

-120.532

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F046111	Metagenome / Metatranscriptome	151	Y
F046750	Metagenome	150	Y
F051592	Metagenome	143	Y
F079414	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_100010421	F046111	N/A	VVIRAKLGDIIGFQIIQIAAQKASFQLTIIALAIEIVSTYRDLERYTSGLGTCTVGTL
Ga0307514_1000104215	F079414	GGCGG	MDLYQSSAVFAAILVLYTIAESPLESLLESLLESLFESLLESLLERTSHREE
Ga0307514_1000104239	F046750	GGA	MIDNKDGHIPSPLIMFTCTALRHALLEWQKNKDVHPKASKSKLKADRPDRSNYFNCKNDGGKIVSCWAVTGHKLLTSPGVADTYTFLMNTWNTLPESYQQKVYNNTLPTVKRQIQQTENPTPAVVISVEAARVDNAILLDYLTSEVALEEPEIGSTDPNIPIDNNCMDDKLHFGMPGGSGDFEDEGDERDAIPTASQR
Ga0307514_1000104240	F006048	AGGA	MLKQRSTLDITRSNWYQVRAQVDKVKSHLIQTARDNIAELYDLHQFESAAERLEFINSLLADNKYLFPIAERVEGGVRGPNPTQRESKAANEWLASTLFPGGSNPVVYLHQILSSGE
Ga0307514_1000104241	F004891	GGA	MGVGRFSRPWRGVGVITMPNAGLDTTRRVEVPPGAGVLRLLVSGVAVGVFIDRRCVADRVEVTR
Ga0307514_1000104248	F051592	GAG	VRLPEVENPLLEVVKHADLHCMEEVGLREVAHDTGNMSKQVESLVNMVRREFGIGCLGVGIAERSI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307514_10001042

Overview

Ecosystem & Geography

Associated Families

Sequences