Scaffold Ga0307514_10000934

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000934
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44452
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (59.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F016905	Metagenome / Metatranscriptome	243	Y
F051592	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000093421	F016905	GGA	MPGHRYTPAEYALQHKVESFARLLSELEEHRLTHIYAVVFLFCQYENIDYLVLRYLNIGALPFEEYSEEWLFDGEI
Ga0307514_1000093443	F006048	AGGAG	MLNQRPMVDITRLNRYQVRTQVDKVKSHYIQSVWDNIAELYDVDHFESATERLELIESVLADNKYLFPVAERVQGGVRGPNPTRRESKAENEWLASTVLPGGGNPAVYLPQI
Ga0307514_1000093444	F010438	GGAG	MWNRRPFMSGSDLGTVSYVTRRFANGLAEAPHWQIIETYWNTAMQQNNIWSIAFEARTKEILKDVC
Ga0307514_100009345	F051592	N/A	MRLHKLENPHLEVLKHSNQHCMEVVGLREVTHDTGNMSKVFESSVNMVRQEFGIGCLHVGIPECSI
Ga0307514_1000093451	F051592	N/A	VKPFVRLHDVDNTLLKVVLHADLHWMEEVGLREIAHNTGNMSKQVESWLDMPRREIGIGNLGVDITERSI