Scaffold Ga0307514_10000910

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000910
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45591
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (61.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062316	Metagenome	130	Y
F079414	Metagenome	115	Y
F092994	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_100009103	F092994	GGA	MDLSAVKRIMSPDERAKRFADRRCVYCGGFNHRAAECAARKKAQTFKAAGAEVKEVGTKAGSEEWGKD
Ga0307514_1000091046	F079414	N/A	VPAVFTAIPVLYTIAESPLESLLDSLLESLLESLFESLLASLLERASHREE
Ga0307514_100009106	F062316	N/A	MHINHHIRMQKYDRNCTFRTNWVHLAGNPCLVLEPEPLNSCDSIEAILAATFEEEPLKDYFWEQSTVPSPWNLYWIEAARGGGRLGINDPVFRSHWARYLGGHSWFPRDAEEPCDCKGHNCLVTHSTVGHAPAAATTANSLGVPLIVVVPPTPTPSKINEYSWPW