Scaffold Ga0307514_10000846

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000846
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49398
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (78.79%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F046750	Metagenome	150	Y
F059517	Metagenome	133	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000084611	F006048	N/A	MHKGDLERGMLKQRPTLGITRSIRYQVRAQVDKVKSHFIQSAMDHIAEHYYLHHFESDAERLEFIDSLLADNEYLFPVAERVAGGVRGANPTQRVSKAANERPASTLLPGGSNSGVYVHQILSSGEKPR
Ga0307514_1000084612	F010438	GGAG	MWNRQLFMSTSNLEMVSYATRCAAKVLAEAPHWQMFGKYWNTAMQQNIIWSIALEACTKEILKEVC
Ga0307514_1000084627	F004891	N/A	MIVRASGLEMGVGRFSRPLRGVGVLAMPDEELDTAQRIESVCKVPPGAGVLRLLVRVMAVGVFIDRRSVGDGVEATR
Ga0307514_1000084628	F010438	GGAG	MWNRRPFMSTSDLEMVSDATRRVAKALPEGPHWQIIETYWNTAMRQNNIWSITFEARRKEIMKEVC
Ga0307514_1000084629	F059517	AGGAG	MLNQRPTLDITHSNRYQVRAQVNKVKSHFIQSVRDNIAELYDLHRFESTAERLEFIDPLVADNKYLFSIAERVEGGVCSANPTQRESNAANE
Ga0307514_1000084630	F046750	GGA	MIDDKDGHIPSPLIMFTCTALCHALREWQKNKGVHPKASKSKLKADRPDCSNYFNCKNDGGKIVSCCAVTGRKLLTSPGVADTYTFLMITCNTLPESYQQRVYSNTLATVKRQIQQAENPTPAVVISVEVARVDNAILLDCLTSEVALHEPEIGSADSTIPINNNCTDDELKFGMPGGSGNFKDAGDESDAIPTASR
Ga0307514_1000084656	F081959	GAGG	VMLTGMSATMRMRMRRNKHRKPMMDQRRMWRTEGIVLESVKIGQYISDI
Ga0307514_1000084660	F010438	GGAG	MWNRRPFMSASDLETVGYAMRPVSKALAEAPHWQIIETYWNTAKQQNNIWSIAFEARTKEILKEVC
Ga0307514_1000084661	F004891	GGAG	MIARAFGLGMGVGRFSRPLMGVEVIAMPNAGLDTTRRVAVPPGAGVLRLLVTGMAVGVFIERQCVVDGVEVTR