Scaffold Ga0307514_10000779

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000779
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52865
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (70.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F019765	Metagenome	227	Y
F036505	Metagenome	169	Y
F046750	Metagenome	150	Y
F081952	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000077927	F004891	GGA	MIARASGFGMGLGRFSKPLRGVEVLAMPHAELDTTRRVECVCMVPLGAGVLRLLVPGVAVGVIIDRRCVAGGVEVTR
Ga0307514_1000077928	F006048	GAG	MLNQRPTVDITRSNRYQVCPQVDGVKSHFIQSVRDNIAELYDLNRFESAAEHLEFIESLLADNKYLFPVAERVEGGVCGPNPTGRESKADNELLASTLLPGGIIPTVHLHQILSSGE
Ga0307514_1000077929	F046750	N/A	VNNRGKYADGFCNSMINDKDGHIPSPLIMFTCTTLRHAVLEWQKNKGVHRKASKSKLKADRPGRSNYFNCKNDGGKIASCCAITGRKLLTSPGVADTYTFLMNIWNTPPESYQQRVYNITLATVNHQMQPAENPTPAVVISVEAARVDNGIFLDYLASEVALEEPEIGSTDPKIPIDNNCTDDKLHFGMPGGSMDYKDEGNDSDDRDAILTASRGRRPVTELERFDLGISDVDGYEGEHCNGADADADEEEESTPVDDGSTQNAED
Ga0307514_1000077935	F019765	GAG	MLQDMDNMEADCIFYVKVGTFTHLEQSKISLLTVNKMGIVTLTAQDDLIASVSFM
Ga0307514_1000077936	F081952	AGG	MNFWPLPGGKYGNSAKQSTQQCHQPNEGQSGLEAERLRALGALHSLRSKKKVVSEKQQQTHFLSDEEKEQWI
Ga0307514_1000077952	F036505	GGA	VIGRVELTDGCLFGSTTFNASSNYSIIHELQLTLEASGIEWTALRNYIPCMAHIIQLALGAFMSSLGVKGRTKSWEAHERNQQFGENESINIGKSQRLRNEGNARINKLSDMRLCFAKINENVRISRYSESAETDLHTVENACGTDYADTWSSKRVD