Scaffold Ga0307514_10000699

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000699
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58526
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (64.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F048690	Metagenome	147	Y
F081952	Metagenome / Metatranscriptome	113	Y
F088003	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000069941	F081952	AGG	MVNAPKKNFSRPPAGKYGKSTKQSTPRHHQTNKGKSGLVEERVRALGALCSLRSKRKLAVEKRHETDFLSNEEKEKWIRDCVERETPVARK
Ga0307514_1000069949	F004778	N/A	VLDRFELTDGCLLGIKMNNASSNYSMTRELQSTLEASGIGWPALRNHIPWMAQVMQLDLGAFMSSLGVKGCTKSWEAPERDQQFGENESIDIGKSQRLRKEGNARINKVSAMRPGLAKIVEKVRIS
Ga0307514_1000069954	F081952	N/A	MVNALKMNCTPLPAGRYGKSKKRSTQRHHQANEGKSGLESERIRALGALRSLRLKKKLAVEKLQETHFLSNEEKEKWNEDYAERETAGARKRVEDAQVAVQQE
Ga0307514_1000069955	F048690	GAG	MLQVMDNMEVSCVLYVKVSMFTHLEQCKIGLLTVNKAGIMTLTVQHDMIVSVDFMLYPGVYLRQTSADVRSLEQHPISI
Ga0307514_1000069957	F088003	GAGG	VREIEHHDVVSAGIFADEFPDKRPREWTKQALIPLEEATEAYMIEVTAEYH