Scaffold Ga0307514_10000673

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000673
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61308
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038958	Metagenome	164	Y
F079413	Metagenome / Metatranscriptome	115	Y
F079540	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000067311	F079540	GGCGG	VHGYAQNVLLDGTFIKLPNGLLYYRQPFHNPTSVEHVGLDCTVEYTNGNQGIMPEVHNIWGQYTQSEENDLVNTIQGPVPSFPVLYFGWTPPNQILQFQKRLPAGKALSTFSNRCETTQQWVLHPQAQEYAVVIPTKFKDLHDWADCVDGFIWVVKQTNKIHIVPVEAMVRLEHLVRENAASCGIDSVWLVNNHVDLNTYWTVY
Ga0307514_1000067326	F079413	GAG	LADGARRTIVQSYWLDLGVDSELQIQVKKLLFDNAYLSKVIDDKKAWFTQMEVHDLIYHQLFFTANSLGQQPTTSQFFQPLTPQTLALVATAIHCALSEYATAKKVTVMFSQNEYRGKFCPSTLID
Ga0307514_1000067378	F038958	N/A	MTDVIANLFVDVHPSKAKLTLFVDGNCFLIASTVSVYSLRQILLRVLADGKTNSLHDALYDRRSSWFDIAFNGICAETKPNMRYRFQVSW