Scaffold Ga0307514_10000665

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000665
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61785
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (55.56%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F063295	Metagenome / Metatranscriptome	129	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000066535	F006048	N/A	MLKQWPTLDIACSNRYQVRAQVDKVKSHFIQSTRDNIAELYNLYRCESAAEHLEFIDSLLADNKYLFHVAECVEGGVRGPNQMQRESKAHNEWLVSTSLPGGSNPAVYLHQILSSGE
Ga0307514_1000066536	F010438	N/A	MVSGSRSIHRFGHLDMTRVVFAMGSLLELDMWNRWLFMSASDLEMVSYATQRVAKALAEAPHWQIIEMSWNTAMQQNNIWSIAFKVRTKVIFKEVC
Ga0307514_1000066537	F004891	GGA	MIARASGLGMRVDRYSRPLRGVEVLVMPDAGLDTTRRVESVCNVLPGAGVLRLLVPGVAVGIFIDRRSVAHWLEVTR
Ga0307514_1000066550	F063295	AGG	VLNGHLPWQLQRIFKIKLQNEDGTFVEYWSALALTTIPENSSNLDPILKFVQVRKAPVAIALQVFSVGTIVGGAYVILEIATSSKTGNGRNERWIVNSLIDLATWKDVYD
Ga0307514_1000066565	F004891	GGA	MRVDRFSRPLRGVEVLAMPDAGLNTTRSVESVWEVLPGAGVLRLLVPGVAVGVYIDRRSVAHQVEFKR
Ga0307514_1000066566	F010438	GGAG	MWNRRPFMSASNLEMVSYATQCVAKELAEAPHWQIIEMCCNTAMQQNNIWSIAFEARTKVILKEVC
Ga0307514_1000066567	F006048	N/A	MLNITRSNQYQVRAKVDKVKSHLIPSAADNIAELYDLHRFESTAERLEFIDSLLADNKYHFPVAECVEGSLRGPNPTQRESKADNEWLVSISLPGGSNAAVYLHQILSLGE
Ga0307514_1000066570	F081959	GAGG	MATMRMGRKKHRKPTMDTHRMWWTEGIVLQSVKIGQYISDL