Scaffold Ga0307514_10000569

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000569
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69831
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (64.13%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F038018	Metagenome / Metatranscriptome	166	Y
F047400	Metagenome	149	Y
F081952	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_100005692	F038018	AGCAG	MTAQTREHLFRHCSRWKDQQKTLWKEVEKATGWSAGRCRHVQVSELLSMEKCDKAVMDFLVATDVGKFPPKRAEE
Ga0307514_1000056947	F047400	GGA	MNTFVLLPLQGSMVQRGPCKDDQWRGYMTVLVINGGIIKSISLLTVVVHPMMKFDVDNPRDCFHQVVK
Ga0307514_1000056949	F004891	GGA	MGVGRFSRPLRGVGVIAIPDVGLDTTRRVESIYTVPPGAGLLRLLVPGMAVVVCIDHRSVADVVEVTR
Ga0307514_1000056959	F081952	N/A	MVNALKKIFSPPLVARYSKSTKRSTERLHEANGGKSTSEADRVRALGALRRVRSRKKLAAGKQRETHFLNNEGKEKLIEDYIERETAGAIK