Scaffold Ga0307514_10000564

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000564
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70237
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (69.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F008531	Metagenome	332	Y
F016905	Metagenome / Metatranscriptome	243	Y
F042672	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000056444	F008531	AGGA	MAHVIQLALGAFMHSLSEKCRTKSWEAHEHDQQFGENESIDIGKSQRLRKEGNDRINKVSDMKPGLAMIIEKVRIS
Ga0307514_1000056454	F042672	AGAAG	VVIPTKYNDLHSWADCVDQFIHVVKQIDMMHTVPVGAFVGLAHLVRENAASDRIDSIWLVNHHVDLDTY
Ga0307514_1000056466	F004778	AGTAG	VLDRLDLPNGRLLGITTDNPSSNYLLTHQLQSILESSGIEWPALRNQIPCMAHVIQLALGAFMSSLGVKDRTKCWEAYDHDQQFGENASIDIGKSQRLRKEGNARINKVSAMRPSLAKIIEKVRIS
Ga0307514_1000056468	F016905	GAG	MPGHRYTPAEYALQGIVESFGKLLSKLAEHHLTNTYAVVFRCCELGNIDYLVLRYLNAGALPFEEFSEEWLHDREI