Scaffold Ga0307514_10000535

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000535
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73913
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (63.46%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F051592	Metagenome	143	Y
F060560	Metagenome	132	Y
F079403	Metagenome	115	Y
F079540	Metagenome	115	Y
F086388	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000053521	F079540	AGG	LSETHVHSMFRSMKLSSLRDALVDFGIPNFGQLFRTPIEDDWGHEVSGLVLGYDQNVLIGSVFIKLQNGLSYYRQPLYCPTAVECLGLDCKVEYMDANQGIMPLSHNIWVQYTESDLDNTFQGRVPSFPVLYFRWTPPNQILQFQERLPAGKSISTFSKRFKKTEQWILHPQPQENAVVIPTKYKDQHGWADCIDGFIRVVKQTDKMHIVPVGAIVGPVHLARE
Ga0307514_1000053528	F086388	N/A	METDDKTAEHLEMTAVKEGNHTLAADDIDWCVSLIDCLCEWHVMNFYPVILNCHHPFVVSQLGQQVQPYSMSLVEILSSTCSVKQR
Ga0307514_1000053547	F004891	GGA	MIARASGFGTGVGRFSRPLRVVGVLAMPDAGLDTTRRVESVCMVPLGAGVLRLLVPGVAVGVIIDRRCVADGVAVTCCVISATRE
Ga0307514_1000053555	F079403	N/A	MGPQNRHDGKHPDTMIKDFRALLDNTQDATHRVAIYSGTREFIKHKSCNMTYILDEQLHAMELCIYHGIKVQVEGLDGERISEMCRCTGSQSWRGGDRWNDWVSVKQRLGKCYGALNGRLPWQLQRLFKIKLLNEDGAFVEYLLALALTTIPENSGNLDPVSKFVQVRKALAVVALYVFSVGNIVGCAHVIPEIATSSKTGDGRNERWIVNSHIDLATWNDVYN
Ga0307514_1000053572	F060560	GGA	MINDKYGHIPSPLIMFTCTALRHALLQWQKNKGVHPKASKSKLKPERPDCSNSFNHRNYGGKNALCCAAMDPKLLTSPGVADMYTFLMNTWNTLPESYQQRMCNNTLATVKRQIQQAENPTPAVVISTAVASVDNAIVLDYLTSEVALEEPEI
Ga0307514_1000053573	F006048	GGAG	MLKQRPTLDISCSNQYQVRAQVNKVKSHFIQSARDNIAELYDLHRFESAAERLEFIDSLLADNKYLFPVAECVEGGVRGPNPMQRESKAANKWPVSTLLPVGSNPAVYLDQILSLGE
Ga0307514_1000053583	F051592	GAG	VHLHEVENPILEVVKHADMHCMEEVGLREVAHNKGNVSKHVESWVNMARREFSIGYLSVGIAERSI