NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000516

Scaffold Ga0307514_10000516


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000516 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)76831
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (62.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051592Metagenome143Y
F059517Metagenome133Y
F062316Metagenome130Y
F063295Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_1000051614F063295GGAGGVLNGHLPWQLQGLFKIKLQNENGAFIECRLPLALTTIPEISGKLDCVSKFVQVRQLLDAVALPVFTLENIFSCAHLIPEITTSGKTGDGCNE
Ga0307514_1000051618F051592N/AMPVHEVANPFLEEVKHADQHCMEEVGLREVTHNSGNMSKHVKSFVYVAWQGFSKGCLGVLIAEHFI
Ga0307514_1000051628F062316N/AMPVGFTKHRTAIGYTFAKTALMNYDDLRELTSASSLIDHHIRMHQYDSNCSCQTNWFNLAGTPSRVFEPEPLNTVESVDTLLAATFEEEPLEACSWEQSTVPSPWNTYSTDAGREGGGLDSNNPLFGPHWTRYTGAHFWFPCDPEETCDCEGHNCAVTHSTIGHAAAAATTA
Ga0307514_1000051657F059517N/AMHRGDIESSMLKQRPTLDIARSNQYHVQAQLDKVIFHLIESMKHNIAELYDLHQFESAAENLEFIDALLADNTYLSLVAQNVEAGVHGPNPTQRESEADHEGLVST
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