NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000510

Scaffold Ga0307514_10000510


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000510 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)78177
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (53.01%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Morchellaceae → Morchella → Morchella sect. Distantes → Morchella sextelata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F004891Metagenome / Metatranscriptome419Y
F010438Metagenome303Y
F026456Metagenome197Y
F059517Metagenome133Y
F063295Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_1000051021F004778N/AVLDRFELTDGRLLGITTDNASSNYSMTHELQSTLDASGIEWPVLRNHIPCMAHLIQLAVCAFVSCLGVTGRTKSWEAHKHAQQFGENESIDFGKSQRLRTEGNARIHKVSAMKPGLAKIIEKVLIS
Ga0307514_1000051023F026456GAGVYNDMFDHIDGIMRALAKKKTQWKEDLFFAVKLARQKLSKYYAEVTPMTGTMLISAHILDPFRKLQSFSMWDKAMDIHA
Ga0307514_1000051065F063295N/AMQRPGRCYGALNGRLPWQLQRLFKIKLQNEDGAFVEYWLALALTTIPENSGNLDPVSKFVQVRKSPAAVALQVFSVGNIVGCAHVIPEIGTSSKTGD
Ga0307514_1000051074F004891GGAMIARASGLGMGVGRFSQPLRGVGVLAMPDAGLDTPRRVESVCKVPLGAGVLRLLVTSVAVGVLIDRRSVADGVEATR
Ga0307514_1000051075F010438GGAGMWNRQPFMSASDLETVSYATRRVAKASAEDPHWQIIETYWNTAMQQNNIWSIAFEARTKEILKEVC
Ga0307514_1000051076F059517AGGAGMLNQRPTLDITRSNRYQVRAQVDKVKSHFIQSGRDNIAELYDLHQFESAAERLEFIDSLLADNKYIFPIAEREEGGVRGPNPTQRESKAANECLAST
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