Scaffold Ga0307514_10000506

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000506
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78759
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (68.09%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F059517	Metagenome	133	Y
F079403	Metagenome	115	Y
F086388	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000050622	F006048	N/A	MLNQWPTWDITRSNRYQVRAQVDNVKSHYIQSARNNIAGLYDLHRFESDAEHLEYIHSLLADNKYLSPVAKCVERGVRGPNPTQRVSTAANEYPASTLLSGRSIPGYYLHQIISSGE
Ga0307514_1000050634	F079403	GGA	MIKNFGTLLDNTQDATNRVTVYNGTREIVKQKSHSQTYISDEQPHAMELCIYHAIKVQVEGLEGTRISQICRCTGSWTWRGGDRRNDRVWVKQCPGRCYGALNGCLPWELQRLFKINLLNEHGTFIEYRLALALTRIPENSGKFDSVSPFVQVRQALAAIALQVFCVGNIIGCTHVIPEIATSSITGDRRNERWIVNSNIDLETWNNG
Ga0307514_1000050651	F086388	N/A	METGDKNAERLEMAVVKEGSRTLAADDIDWCVSQIDCLCERHVVNFYLVILNCCHRVVASQIGHPVEPYSLSSVEILSSTCSLNKDSGKLL
Ga0307514_1000050670	F004891	N/A	MIARPSGLGMGVGRLSKLLRGVGVLAMPDGGQETTLHIESVWVVPLGAAVLQLLVPGVAFGVIIDPPCVADGVISATPELFSEDEGVEF
Ga0307514_1000050671	F010438	GGAG	MWNRWPFMSASELETESYATRSVAKALAEAPHWQIIGKYWNTAMQQNNIWSIAFETRTKESLKEVC
Ga0307514_1000050672	F059517	AGGAG	MLKQRPTLDNTHSNQYQVCAQVDQVKSHFIQFARDNIAELYDLHRFESNAECLQFIDSLLADNKYLFPVAEHVEGGVRDPNPTPRVLKAANK