NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000504

Scaffold Ga0307514_10000504


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000504 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)78776
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (72.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F006048Metagenome382Y
F008227Metagenome336Y
F008531Metagenome332Y
F019765Metagenome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_1000050434F008531AGGAMAHVIPLALGAFISSLGVKGRTKSWEAHERDQQFGENESIDIRKSQRLQNEGNARINKVSAMKPSLAKIIEKVHIS
Ga0307514_1000050439F019765AGGMLQVMDNMEASCIFYVKVGTFTHLEQSKIFLLTVNESGIVTLTVQHDLIVSVIFM
Ga0307514_1000050459F008227N/AMAGDTSNPVILGTQQQRRHKLVHHDAANAATKHMIQDAHLKIIRKTGISKNKKQHTVGCDYNHTDANDGRLTV
Ga0307514_1000050463F004778AGGVKDVLDRFELTDAHLLGITTDNASPNYPMTRELQSTLEASGIEWPALRNHIPCMAHIIQLALGAFISSLGVKGRTKSWEAHECDQQFGENESMDIAKSQGLRKEGNASINKVSAMRTGLAKIIEKVRIS
Ga0307514_1000050471F006048AGGAGMLKQWPMLDITCSNWYQVCAQVDKVKSNFIQSARDNIVELYDLHSLESDSEHLEFIDSPLADNKYLVPVAECVEGGVRDPNPMQTVSKAANEWSASSLLPGGSNPVVYLPQILSSGE
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