NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000500

Scaffold Ga0307514_10000500


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000500 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79389
Total Scaffold Genes103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (63.11%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006048Metagenome382Y
F010438Metagenome303Y
F047400Metagenome149Y
F059517Metagenome133Y
F060560Metagenome132Y
F080709Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_1000050040F080709N/AMVELSTRKREIRGDGGNHHEKLGLERISCASQLTIPDTAGTSPDLAGNITDTGSSKPNQASSTPDFS
Ga0307514_1000050044F047400AGGAGMAQLSAGKHDQWRGYMTILVITLGIIKSISIRTTVIRTMIKFDVDTPWDCFRQEVKWTLAIY
Ga0307514_1000050045F059517GGAGMLDNTHSNQYQVRAQVDKVTSHFIQSARDHIAELYDLHCFESDAEHLEFIDSLLADNKYLFPVSACVEGGVRSPNPMQRV
Ga0307514_1000050089F010438GGAGMWNRRPFMSASDLEMVSYATRHVAKALAEAPHWQTMEMYWNTAMQQNNIWSIAFEARTKEIFKGVC
Ga0307514_1000050090F006048GAGMLNQQLTVDITHSNRYKVRAQVDKVKSHFIQSARDNIAELYDLHHFESAAEHLEFIDSLLADNKYLFPVAEHVEGGVHGPNPTQRESQADNEWLASTLLSGGSNSTVYLHQILSSGE
Ga0307514_1000050091F060560N/AMFTCTAFCHALLEWQKNKGVHPKASKSKLKVKRPDRSNNFNHKNDGGRIASCCAVTGRKLLTSPGVAGTYTFLMNTWNTLPESYQQRVYNNTLATDKRHIQQVENPMPAMVISVEAARVDNAILLDYLASEVALEEPEIGSTDPNIPIDNNCTDDELHSGMPGGSWDYQDEGDESDDRDAIPTASQR
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