Scaffold Ga0307514_10000483

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000483
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81652
• Total Scaffold Genes: 123
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (61.79%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F047400	Metagenome	149	Y
F051592	Metagenome	143	Y
F059517	Metagenome	133	Y
F060560	Metagenome	132	Y
F063295	Metagenome / Metatranscriptome	129	Y
F079403	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_100004832	F079403	N/A	MGPPNCRDGTHPDAIIKDSRALIDKRQDAKHRPAKYRGTREVIKHKSRNNTYISDEQLHAIELCIYHCIMVQVEGLEGERISQMWQCTGSQSCLGGDRRNDWVRVKQRPGRCYGALNEHLQWQLQRLFKIKLQNEDGPFVEYWIALVLTTIPENSGNLDPVSKFVHVRNAPSALALQVFSVANIVGCAHIIAEIATSSKTGDGQNE
Ga0307514_1000048330	F004891	GAG	MVAHASGLGMGVGRFSKPQKGVGVIAMLKAELDTTQHVAVPPGAAVLPMLVTGVALRVLIDRRCVADGVEVTRWVITAP
Ga0307514_1000048331	F047400	GGA	MNTFVLLPLQESMAQCSAGKQDQWRGYMTVLVVNHGMIKSISILTTVIRPMIKFDVDKPRDWFRQEVKWTLAIL
Ga0307514_1000048337	F060560	N/A	VETIPRSIYIKFYHWATNCGHYADEFYNSMINDKDGHIPSPQIMFICTTLRHALLEWQKNKCVHLKASKSKLKADRPDRSKYFNYKNDGGKIASCCAVPGRRLLTSPGVSDTYRFLMNTWNTLPERYQQRVYNNTVATVKRYIQQEENPTPAVVISVEAARVDNAIHLDYLAS
Ga0307514_1000048338	F006048	AGGAG	MLNLRPTVDITSSNRYQVRAQVDKVKSHFIQSVRDNIAELYDLHPFESAAERLEFIDSLLADNKYFFPVAELVKGGVRSPNPTQRESNADSDWLASTVLPGGDNPAVYLHQILSLGD
Ga0307514_1000048339	F010438	GGAG	MWNRRPFMSASDWETVSYATRCVGKALPEATHWQIIETYWNAAMQQNNIWSIAFEARTKEILKDVC
Ga0307514_1000048340	F004891	GGA	MIARASGFGMGVGRFSRPLRGVSVQAMPDAELDTTRHVESVCMAPLVAEVLRLLVPSVVVGVIIDSRCVVDGVEATR
Ga0307514_1000048359	F059517	AGGAG	MLNQLPTLYITCSILYLVQAQVDKVKSHFIQLARDNIVEVYDLHHFESAAEHLESIDSLLADNGYLFPIAEFAKGGIRGTNPMQTVKIR
Ga0307514_100004836	F051592	GAG	MRHHAVENSLLQVVKDADLHCMEEVGLREVAHNTGNVSKHVESSVNMAVRKFGIG
Ga0307514_1000048388	F063295	GGAG	VLNGRLQWQLQRVFKIQLLNENGTFVEYWLALALTTIPENSSKLDLVSKFVQVRTASIAVALQCFSVGNIVSCAQVFREIPTGSTIGDGRNEQWIVNSHIDLVTWNHV