Scaffold Ga0307514_10000442

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000442
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 89688
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (57.66%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F016905	Metagenome / Metatranscriptome	243	Y
F060560	Metagenome	132	Y
F062316	Metagenome	130	Y
F079413	Metagenome / Metatranscriptome	115	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000442105	F081959	GGA	MSTGMRARMATMQMRRKKHRKPMMDQRRMWRTEGIVLESVKIGQYISDM
Ga0307514_10000442107	F006048	AGGAG	MLKQRPTFDITRSNWYQVRAQVDKVKSHFIQSTTDNIAELYDLHRFESTAEHLEFIDSLLADNKYLFPISERVEGGVRGPNPTQRGSKAANEWLVSTLLPGRSNPAVYLHQILSSGE
Ga0307514_10000442108	F004891	GGA	MIARASGFGMGVGRFSRALSGVGVLAMPDAGLDTTRRVEPVYVIPLGAGVLRLLVSGVAVGVIIDRRCVADGVEVTR
Ga0307514_1000044235	F079413	N/A	LDLRSETKLQIHVKELLFDDAYHSKVIDDKKSWFTSMEVLDLIYHQFFFTVNSLGRQPTTSQFFQPLAPQTLALVAAAIHCALSEYATEKKVTFMFSQDEYRGKFCPSTVID
Ga0307514_100004425	F062316	N/A	MQKYDSNCTSRTNWFDLAGTSCLVVEPEPLNAFESIEAILRESFKEEPLEAYFWKQSAVPSPWNTYWTDAAREGGGLDINDPVFGRHWTRYQGAHSWFPCDPEEPCECEGHNCAGTHSTIGHAAAAATTAKSLGIPLIVIVPPTPTPSKLDAYNCHW
Ga0307514_1000044261	F004891	GGA	MVVGRFSSPLRGVGVLAMLDAGLDKTRRVESVCIVQLGAGVLRLLVPGMAVGVIIDRRCVADRVEVTS
Ga0307514_1000044262	F010438	GGA	MWNRWPFLSASDLEMVSYAKRRIAKALAEAPHWQIIETYWNTAMLQNNIWSIAFEAPTKEISKEVC
Ga0307514_1000044263	F006048	AGGAG	MLNQQPTVDITRSNRYQVCIQVDKVKSHFIQSARDHIAERYDLHRFEFAAERLEFINSLLADTKYLFPVAEHVKGGVRSPNATQRESKADNEWRTSPLLPGGSNPVVYQDQILSSGE
Ga0307514_1000044264	F060560	GGA	MINDKDGHIPSPLIMFTCTALRHALLEWQQNKGIHLKASKSKLKVDKPDRSNNINHTYDGGKIASVYAVTGRKLLTSPVVADTYMFLMSTWNTLPESYQHRVYNNSLATIKGQIKHAENPMPAVVISVEAVSVDNAILLDYLASEVALEEPEIGNTDPNIPIDNNCTDDGLHFGMPGASGNYEDEGDESEDCDDIPTASRR
Ga0307514_1000044299	F016905	GAG	MPGHRYTPAEYALQQKVESFARLLSELEEHRLTHIYTVVLLFCQYENIDYLVLRYLNSGALPFEEYSEEWLFDGEI