Scaffold Ga0307514_10000430

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000430
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 91831
• Total Scaffold Genes: 118
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (63.56%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F010438	Metagenome	303	Y
F046750	Metagenome	150	Y
F051592	Metagenome	143	Y
F059517	Metagenome	133	Y
F102183	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000043017	F059517	GAGG	MAHVGYYTLKQYQVRAHVDKVKSHFIQSARENIAEINDLHRFESAAEHLEFIHSILPDNKYLFPIAECVGGGVRGPDPTQRVETC
Ga0307514_1000043018	F010438	N/A	MTRLVFATARLLELYMWNRQPFMRASVLETVNYATRRISKPLAEGPRWQIIETYWNTAMQQNNIWSIAFEARTKEILKEVC
Ga0307514_1000043019	F004891	GGAG	MITQASGFGMALGRFSRPWRGVGVITMPDAGLDTTRRVEVPLGAGVLRLLVLGVAVGVFVGRRCVADGVEVTG
Ga0307514_1000043034	F102183	N/A	MKKPKISLPTSLVFAEEECLRALLDFFYHTNVGRISGVVGEADSDHEELSDRGV
Ga0307514_1000043074	F046750	GGAG	MYIKFYHWANNRGKYADGFYNSMINNKYSHIPSPLVMFTCTSLRHALLEWQQNQGVHSKVSKSKLQEDRPDRSNYFNHKNNGRKIVSCCAVTCHKLLTSPGIADTYTFLMNTWITLLESYYQRVYDQTLATVKGQIQQTENRTPAMVISVTAVRVVNAILLDYLACEVALEEPEIGSTDPNIQIDNDCRDQDLQSVIPVGTGDNEDECDERDDHNAISSASRR
Ga0307514_1000043076	F010438	AGGAG	MYNRRPFMSASDLEMVRYATQHVAKAFPEAPYWLIIETYWNTAMQQNNIWSIAFVARKKEILKEVCFINGRHCI
Ga0307514_1000043077	F004891	GGA	MIVPASGLGMRVGRFSRPLRGVGVLAMPDAGRDTTRCVESVCMVPLGAHVLRLLVPCVAVGANIDSRCVVDRVEVMR
Ga0307514_1000043087	F004891	GGA	MIARASGLGMGVGRFSRPLRGVDVLGMPDAGPDTTRRVESVCKVPPGAGVLRLLVTSVAVGVFIDRRCVADGVEATR
Ga0307514_1000043088	F010438	GGAG	MWNRRPFMSASDLETVSYATRRVAKALAEAPHWPILETYWNAAMQQNSIWSIAFEARTKEILKEVC
Ga0307514_1000043089	F046750	GGA	MYAVQMQLRESRKVLTNGQRPLYFLAEAIPRFIYIKFYHRVNNRGKYADGFYNSMIDDKDGHIPSPLIMFTCTALRHALLEWQKNKGVHLKASKSKLKADRPDRSNYFNCKNDGGKIVSCCAVTGRKLLTSPDVADTYRFLMNTWNTLPESYQQRVYNNTLATVKRQIQQAANPTPAVVISVEAARVDNAILVDYLTSEVTFEEPEMGSTDPNIPMDNNCTDDKLHFGMPGGSRDFEDDGEESEDIPTASRRRRAATELERFALGTSDVDGYEGKDGYDADEEEAASQADDGSTQNVED
Ga0307514_1000043094	F051592	GGA	MRLPAVENPHVEVIKHADRRCLEEVGLREVTHDPGNMSKHLEFSMDIARQEFGIGCLGIVIAERSI