Scaffold Ga0307514_10000415

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000415
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 95149
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (58.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036505	Metagenome	169	Y
F038958	Metagenome	164	Y
F047400	Metagenome	149	Y
F063295	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000041525	F047400	GGA	MNSFVLLPLQESMVQRGAGKHDQWRGYIIVLVVNHGIIMSISILTAVIRPMIKFDVDKLQDCFR
Ga0307514_1000041534	F063295	GGA	VWLQQCPGRCYGALNGRLPWQLQRLFKIKLQNKDGALDKYWLALALATIPENSGNLDPVLKIVPVRNTPAAVALQFFRMGYIVSCTYVIPVIANSYKTGDG
Ga0307514_1000041558	F038958	N/A	MASLFVDVHLSKAKLTLIHDGNDFLIASMITVYSFQQIWLRVAVDGSTRSLYNALYDYCRSRFDIALHLI
Ga0307514_1000041559	F036505	N/A	MTWEQQSTLDMSVIEWPALRNHLTCTACIIQLPLSALMSSLSVNGCTKYWEAHERDQQFGENGRIDIGTSQRLRKEGNVRIIKVSAMTSGLAKIIEKVHISRYFESSETDLHIAENASCIDYADTWSSK