NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000413

Scaffold Ga0307514_10000413


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000413 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)95574
Total Scaffold Genes106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (61.32%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F046111Metagenome / Metatranscriptome151Y
F080709Metagenome / Metatranscriptome114Y
F102183Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000413106F004778GGALKEVLDCFELTDGRLLGITTDNASSNYSMTRELQTTLEASGIEWPALRNHVPRMVHIIQLALGAFMSSLGVKGRTRSWEAHERDQQFGENESTDIGKSQRLRKEGNARINKVSAMRPGLAKIIEKVRIS
Ga0307514_1000041312F046111AGGAMDVSSIEHVVIRAKLGDLIGLQLIQIAEQKASFHLTIFALVIDMVQTHRDLERYTCGLWTCTASIL
Ga0307514_100004135F080709N/AMVELSTRKREIRGDGGNHHEKLGLERISCASQLTIPDTADTSPDPAGNNSVMRSCKPHQVSSTPNQASRTPDFS
Ga0307514_1000041397F102183AGGGGGVGCEKVFKKPKISLPMSLVFAEEKCLQALLDFLYHTHVGRISRVVEEAENSDHEESSEGG

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