Scaffold Ga0307514_10000398

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000398
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 98364
• Total Scaffold Genes: 119
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (64.71%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F004891	Metagenome / Metatranscriptome	419	Y
F010438	Metagenome	303	Y
F026456	Metagenome	197	Y
F036505	Metagenome	169	Y
F038958	Metagenome	164	Y
F059517	Metagenome	133	Y
F060560	Metagenome	132	Y
F063295	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000398101	F004891	GGA	MGVGRSSRQLRVVGVLAMWDVGLDTMRRVESVCMVPLGAGVLRLQVPGVEVIVFIDSHSVADGMDVTC
Ga0307514_10000398102	F010438	GGAG	MWNRWPFISASYLEMVSYATRCVAKALAAALQCQIIETYCNTAMQQNNIWSIAFKAHTKEIFKEVC
Ga0307514_10000398103	F059517	GAG	MLKQWTTLDIACSNQYQARAQVDKVKSYFIQSVRDNIEDIYDLHRLESAAEYLEFIESHLAENKYCFPVAERVEGGVHSPSPMKRESKAAKEWLASTFFPGGSNPTDYIHHIVSSGE
Ga0307514_10000398104	F060560	N/A	MFDDKDGEISSPLIMFTCTTLHNALLEWEKNKGVHLKASRSKLKADRPDRSNYFNYKNYGGYITSCCAATVRKLSTLAGIADTYTFLMNTWNTLPKTYQQRVYKNTFATVKYQIRQAENPMPAVVISVKAARVDDAIRHPNLTSEVALVEPEIASTD
Ga0307514_100003982	F004778	N/A	VLDRFEIADGCLLGIMTDNAFSKYLMTPKLQSTLEASLIEWPALRNHIPCMAHIIQLALGAFIGSLGVKGCTESWEAHERDEQFGENETIDIGKSQRLRTDGNARINKVLAMRPGLAKIIEKLHIS
Ga0307514_1000039823	F026456	GGA	MVTLHHVITVYNDMFDHMDGVMRTLAKKNTQWKEDLYFVMEFAQQKLSKYHFEVTPTTDVLFISAQIPDSLWKLRSFKKWDNGMDINPDDETSYTTKY
Ga0307514_1000039825	F036505	N/A	MTQELQSKPEATGIEWPALRDHIPCMAHGIQHALGGFMSSLGIKGRTKSWDAHEHDQQFGENESTDLRKSQRLRNEGNARINKVSAMKPGLGKIVEKVCILRIFESTATGRCIAANASSSDYADAWSSKRVY
Ga0307514_1000039826	F038958	N/A	MNDVMANLFVDVHPSSAKLTVFLDGNCFLIASTASEYSLRQMLLKVLADGRMRLLCTVLYDRHSSRFDIAFHGR
Ga0307514_1000039892	F063295	N/A	MNLQNEDGAFIDYWSALVLTTIPGSSGNLDPVSKFVQVRHATVFVSLHVFSLGNIVGCTHVSEAIVYSCKTPDERNEQWIVNSYIDLATWYDVYKW